By Neocles B. Leontis and John SantaLucia, Jr. (Eds.)
content material: The energetics of nucleotide ionization in water-counterion environments / Harshica Fernando, Nancy S. Kim, George A. Papadantonakis, and Pierre R. LeBreton --
Parameterization and simulation of the actual homes of phosphorothioate nucleic acids / Kenneth E. Lind, Luke D. Sherlin, Venkatraman Mohan, Richard H. Griffey, and David M. Ferguson --
Crystallographic experiences of RNA inner loops / Stephen R. Holbrook --
Hydrogen-bonding styles saw within the base pairs of duplex oligonucleotides / William N. Hunter, Gordon A. Leonard, and Tom Brown --
constitution and balance of DNA containing inverted anomeric facilities and polarity reversals / James M. Aramini, Johan H. van de Sande, and Markus W. Germann --
Conformational research of nucleic acids : difficulties and ideas / Andrew N. Lane --
NMR constitution choice of a 28-nucleotide sign acceptance particle RNA with entire rest matrix equipment utilizing corrected nuclear Overhauser influence intensities / Peter Lukavsky, Todd M. Billeci, Thomas L. James, and Uli Schmitz --
Molecular modeling of DNA utilizing Raman and NMR facts, and the nuclease task of 1,10-phenanthroline-copper ion / W.L. Peticolas, M. Ghomi, A. Spassky, E.M. Evertsz, and T.S. Rush, III --
third-dimensional NOESY-NOESY hybrid-hybrid matrix refinement of a DNA three-way junction / Varatharasa Thiviyanthan, Nishantha Illangasekare, Elliott Gozansky, Frank Zhu, Neocles B. Leontis, Bruce A. Luxon, and David G. Gorenstein --
choice of structural ensembles from NMR information : conformational sampling and chance overview / Nikolai B. Ulyanov, Anwer Mujeeb, Alessandro Donati, Patrick Furrer, He Liu, Shauna Farr-Jones, David E. Konerding, Uli Schmitz, and Thomas L. James --
NMR experiences of the binding of an SPXX-containing peptide from high-molecular-weight simple nuclear proteins to an A-T wealthy DNA hairpin / Ning Zhou and Hans J. Vogel --
Thermodynamics of duplex formation and mismatch discrimination on photolithographically synthesized oligonucleotide arrays / Jonathan E. Forman, Ian D. Walton, David Stern, Richard P. Rava, and Mark O. Trulson --
RNA folding dynamics : computing device simulations through a genetic set of rules / A.P. Gultyaev, F.H.D. van Batenburg, and C.W.A. Pleij --
An up-to-date recursive set of rules for RNA secondary constitution prediction with more suitable thermodynamic parameters / David H. Mathews, Troy C. Andre, James Kim, Douglas H. Turner, and Michael Zuker --
Modeling of DNA through molecular dynamics simulation : constitution, bending, and conformational t[r]ansitions / D.L. Beveridge, M.A. younger, and D. Sprous --
Molecular dynamics simulations on nucleic acid structures utilizing the Cornell et al. strength box and particle mesh Ewald electrostatics / T.E. Cheatham, III, J.L. Miller, T.I. Spector, P. Cieplak, and P.A. Kollman --
Observations at the A as opposed to B equilibrium in molecular dynamics simulations of duplex DNA and RNA / Alexander D. MacKerell, Jr. --
Modeling duplex DNA oligonucleotides with converted pyrimidine bases / John Miller, Michael Cooney, Karol Miaskiewicz, and Roman Osman --
How the TATA field selects its protein accomplice / Nina Pastor, Leonardo Pardo, and Harel Weinstein --
RNA tectonics and modular modeling of RNA / Eric Westhof, Benoît Masquida, and Luc Jaeger --
Hairpin ribozyme constitution and dynamics / A.R. Banerjee, A. Berzal-Herranz, J. Bond, S. Butcher, J.A. Esteban, J.E. Heckman, B. Sargueil, N. Walter, and J.M. Burke --
Molecular modeling stories at the ribosome / Stephen C. Harvey, Margaret S. VanLoock, Thomas R. Rasterwood, and Robert K.-Z. Tan --
Modeling strange nucleic acid constructions / Thomas J. Macke and David A. Case --
computing device RNA third-dimensional modeling from low-resolution info and multiple-sequence info / François significant, Sébastien Lemieux, and Abdelmjid Ftouhi --
Comparative modeling of the third-dimensional constitution of sign popularity particle RNA / Christian Zwieb, Krishne Gowda, Niels Larsen, and Florian Müller.
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Additional info for Molecular Modeling of Nucleic Acids
Membrane fluidity regulation of fatty acid desaturase action. Biochemistry, 15, 5228-33. , Vigh, L. & Murata, N. (1993). The temperaturedependent expression of the desaturase gene desA in Synechocystis PCC6803. FEBS Letters, 318, 57-60. , Maresca, B. R. (1994). Acyl-CoA desaturases and the adaptive regulation of membrane lipid composition. In Temperature Adaptation of Biological Membranes, ed. R. Cossins, pp. 129-139. London: Portland Press. , Tiku, P. R. (1995). An isothermal induction of the A9-desaturase in carp hepatocytes.
L. (1977). Absorption inhibition as a mechanism of freezing resistance in polar fishes. Proceedings of the National Academy of Sciences, USA, 74, 2589-93. 20 C . - H . C . , Radding, W. L. (1977). Circular dichroism of protein and glycoprotein fish antifreeze. Biopolymers, 16, 2575-8. W. L. (1989). Inhibition of growth of non-basal planes in ice by fish antifreeze. Proceedings of the National Academy of Sciences, USA, 86, 881-5. M. L. (1982). Relationship of amino acid composition and molecular weight of antifreeze glycopeptides to non-colligative freezing point depression.
L. (1989). Inhibition of growth of non-basal planes in ice by fish antifreeze. Proceedings of the National Academy of Sciences, USA, 86, 881-5. M. L. (1982). Relationship of amino acid composition and molecular weight of antifreeze glycopeptides to non-colligative freezing point depression. Biochimica et Biophysica Ada, 717, 322-6. R. L. (1987). Primary and secondary structure of antifreeze peptides from arctic and antarctic zoarcid fishes. Biochimica et Biophysica Ada, 915, 357-70. L. L. (1985).